lumi (version 2.24.0)

plotStringencyGene: plot the Stringency related control probe profiles

Description

Plot the Stringency related control probe (Low-Stringency, Medium-Stringency and High-Stringency) profiles. Using getControlType function to view available stringency types.

Usage

plotStringencyGene(controlData, lib = NULL, slideIndex = NULL, addLegend = TRUE, logMode = TRUE, ...)

Arguments

controlData

a LumiBatch object including control data or a control data data.frame

lib

the annotation library (for retrieving the gene name)

slideIndex

the slide index or ID corresponding to each sample

addLegend

whether add legend or not

logMode

whether show the data in log2 scale

...

other parameters used by default matplot function

Value

plot the picture and return TRUE if everything is OK

See Also

addControlData2lumi, plotControlData

Examples

	controlFile <- system.file('doc', 'Control_Probe_Profile.txt', package='lumi')
	if (file.exists(controlFile)) {
  	controlData <- getControlData(controlFile)
  	plotStringencyGene(controlData)
	}