create_standardization_prompt

Create prompt for standardizing cell type names

internal

Automated cell type annotation for single-cell RNA sequencing data
using consensus predictions from multiple large language models (LLMs). LLMs are
artificial intelligence models trained on vast text corpora to understand and
generate human-like text. This package integrates with 'Seurat' objects and
provides uncertainty quantification for annotations. Supports various LLM
providers including 'OpenAI', 'Anthropic', and 'Google'. The package leverages
these models through their respective APIs (Application Programming Interfaces)
<https://platform.openai.com/docs>, <https://docs.anthropic.com/>, and
<https://ai.google.dev/gemini-api/docs>.
For details see Yang et al. (2025) <doi:10.1101/2025.04.10.647852>.

Chen Yang

mLLMCelltype

Cell Type Annotation Using Large Language Models

create_standardization_prompt function

<dl><dt>all_cell_types</dt>
<dd>A vector of cell type names to standardize</dd></dl>

Arguments

Create prompt for standardizing cell type names — create_standardization_prompt

<dl>

<dt>all_cell_types</dt>
<dd>A vector of cell type names to standardize</dd>

</dl>

create_standardization_prompt: Create prompt for standardizing cell type names

Description

Usage

Value

Arguments