extract_labeled_value

Extract numeric value from line containing a label

internal

Automated cell type annotation for single-cell RNA sequencing data
using consensus predictions from multiple large language models (LLMs). LLMs are
artificial intelligence models trained on vast text corpora to understand and
generate human-like text. This package integrates with 'Seurat' objects and
provides uncertainty quantification for annotations. Supports various LLM
providers including 'OpenAI', 'Anthropic', and 'Google'. The package leverages
these models through their respective APIs (Application Programming Interfaces)
<https://platform.openai.com/docs>, <https://docs.anthropic.com/>, and
<https://ai.google.dev/gemini-api/docs>.
For details see Yang et al. (2025) <doi:10.1101/2025.04.10.647852>.

Chen Yang

mLLMCelltype

Cell Type Annotation Using Large Language Models

extract_labeled_value function

<dl><dt>lines</dt>
<dd>Character vector of all response lines</dd>
<dt>pattern</dt>
<dd>Pattern to match the label</dd>
<dt>value_pattern</dt>
<dd>Pattern to extract the numeric value</dd></dl>

Arguments

Extract numeric value from line containing a label — extract_labeled_value

<dl>

<dt>lines</dt>
<dd>Character vector of all response lines</dd>


<dt>pattern</dt>
<dd>Pattern to match the label</dd>


<dt>value_pattern</dt>
<dd>Pattern to extract the numeric value</dd>

</dl>

extract_labeled_value: Extract numeric value from line containing a label

Description

Usage

Value

Arguments