print_consensus_summary

This function prints a detailed summary of the consensus building process,
including initial predictions from all models, uncertainty metrics, and final consensus
for each controversial cluster.

internal

Automated cell type annotation for single-cell RNA sequencing data
using consensus predictions from multiple large language models (LLMs). LLMs are
artificial intelligence models trained on vast text corpora to understand and
generate human-like text. This package integrates with 'Seurat' objects and
provides uncertainty quantification for annotations. Supports various LLM
providers including 'OpenAI', 'Anthropic', and 'Google'. The package leverages
these models through their respective APIs (Application Programming Interfaces)
<https://platform.openai.com/docs>, <https://docs.anthropic.com/>, and
<https://ai.google.dev/gemini-api/docs>.
For details see Yang et al. (2025) <doi:10.1101/2025.04.10.647852>.

Chen Yang

mLLMCelltype

Cell Type Annotation Using Large Language Models

print_consensus_summary function

<dl><dt>results</dt>
<dd>A list containing consensus annotation results with the following components:<ul>
<li>initial_results: A list containing individual_predictions, consensus_results, and controversial_clusters</li>
<li>final_annotations: A list of final cell type annotations for each cluster</li>
<li>controversial_clusters: A character vector of cluster IDs that were controversial</li>
<li>discussion_logs: A list of discussion logs for each controversial cluster</li>
</ul></dd></dl>

Arguments

Print summary of consensus results — print_consensus_summary

<dl>

<dt>results</dt>
<dd>A list containing consensus annotation results with the following components:<ul>
<li>initial_results: A list containing individual_predictions, consensus_results, and controversial_clusters</li>
<li>final_annotations: A list of final cell type annotations for each cluster</li>
<li>controversial_clusters: A character vector of cluster IDs that were controversial</li>
<li>discussion_logs: A list of discussion logs for each controversial cluster</li>
</ul></dd>

</dl>

print_consensus_summary: Print summary of consensus results

Description

Usage

Value

Arguments