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mMPA (version 1.2.0)

Implementation of Marker-Assisted Mini-Pooling with Algorithm

Description

To determine the number of quantitative assays needed for a sample of data using pooled testing methods, which include mini-pooling (MP), MP with algorithm (MPA), and marker-assisted MPA (mMPA). To estimate the number of assays needed, the package also provides a tool to conduct Monte Carlo (MC) to simulate different orders in which the sample would be collected to form pools. Using MC avoids the dependence of the estimated number of assays on any specific ordering of the samples to form pools.

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Version

Install

install.packages('mMPA')

Monthly Downloads

158

Version

1.2.0

License

MIT + file LICENSE

Maintainer

Tao Liu

Last Published

October 12th, 2018

Functions in mMPA (1.2.0)

mpa

Number of Assays Needed using Mini-Pooling with Algorithm (MPA)
minipool

Number of Assays Needed using Mini-Pooling
mmpa

Number of Assays Required using Marker-Assisted Mini-Pooling with Algorithm (mMPA)
pooling_mc

Monte Carlo Simulation for Estimating the Number of Assays Required when Using Pooled Testing