mQTL provides a complete QTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using QPN approach, peak alignment using RSPA approach, dimensionality reduction using SRV approach and finally QTL mapping using R/qtl package.
| Package: | mQTL |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2013-09-18 |
| License: | GPL (>= 3) |
Main fucntions:
format_mQTL: creates the proper format of data
align_mQTL: peak alignment and normalisation
pre_mQTL: dimension reduction by statistical recoupling of variables
process_mQTL: computes LODs using extended Haley-Knott method
post_mQTL: plots the results of a given run
summary_mQTL: provides the results as a table