mRMRe (version 2.0.3)

cgps: Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)

Description

This dataset contains gene expression of 200 cancer cell lines for which sensitivity (IC50) to Camptothecin was measured (release 2).

Usage

data(cgps)

source

http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-783 http://www.nature.com/nature/journal/v483/n7391/extref/nature11005-s2.zip

Details

Camptothecin is a drug mainly used in colorectal cancer.

References

Garnett MJ et al. "Systematic identification of genomic markers of drug sensitivity in cancer cells", Nature, 483:570-575, 2012.

Examples

data(cgps)

message("Gene expression data:")
print(cgps.ge[1:3, 1:3])

message("Gene annotations:")
print(head(cgps.annot))

message("Drug sensitivity (IC50) values:")
print(head(cgps.ic50))