macat (version 1.46.0)

discretizeAll: Discretize complete expression matrix

Description

perform discretization on all chromosomes and write python flat files

Usage

discretizeAll(data, margin = 10)

Arguments

data

MACATData Object

margin

symmetric quantile in percent

Value

produces python flat file

Details

The filename for the python flat files are discrete_seqs_margin__chrom_.py where and are the names of the chromosome and the margin used for discretization. For details on the discretization see discretize.

See Also

discretize

Examples

 # !!! takes some time !!!
 ## Not run: 
#   #loaddatapkg("stjudem")
#   #data(stjude)
#   data(stjd)
#   discretizeAll(stjd, margin=10) 
#  ## End(Not run)