plot.MACATevalScoring

plot "x11" or create a "html" -file with further information. HTML-page will open automatically.

output

HTML-filename, default:<code>Results<chomosome>_<class>.html</class></chomosome></code>

HTMLfilename

Title of HTML-page, default: &#147;Results of class <class> on chromosome <chromosome>&#148;</chromosome></class>

mytitle

if FALSE: Possibility to plot several plots in one device

new.device

further arguments passed on to generic function <code>plot</code>


  Function plots scores, 0.025 and 0.975 quantiles of the permuted
  scores (grey lines), and sliding average score (red line) along the
  chromosome. Yellow dots highlight regions, in which the smoothed
  absolute scores exceed the permutation-derived quantile boundaries.


hplot

This library contains functions to investigate links
between differential gene expression and the chromosomal
localization of the genes. MACAT is motivated by the common
observation of phenomena involving large chromosomal regions
in tumor cells. MACAT is the implementation of a statistical
approach for identifying significantly differentially
expressed chromosome regions. The functions have been tested
on a publicly available data set about acute lymphoblastic
leukemia (Yeoh et al.Cancer Cell 2002), which is provided in
the library 'stjudem'.

J Toedling

macat

MicroArray Chromosome Analysis Tool

plot.MACATevalScoring function

HTML-filename, default:<code>Results<CHOMOSOME>_<CLASS>.html</code>

Title of HTML-page, default: <dQuote>Results of class <CLASS> on chromosome <CHROMOSOME></dQuote>

Function plots scores, 0.025 and 0.975 quantiles of the permuted
  scores (grey lines), and sliding average score (red line) along the
  chromosome. Yellow dots highlight regions, in which the smoothed
  absolute scores exceed the permutation-derived quantile boundaries.

plot.MACATevalScoring: Plot function for MACATevalScoring objects.

Description

Usage

Arguments

Details

See Also

Examples