maftools (version 0.99.30)

genesToBarcodes: Extracts Tumor Sample Barcodes where the given genes are mutated.

Description

Extracts Tumor Sample Barcodes where the given genes are mutated.

Usage

genesToBarcodes(maf, genes = NULL, justNames = FALSE)

Arguments

maf

an MAF object generated by read.maf

genes

Hogo_Symbol for which sample names to be extracted.

justNames

if TRUE, just returns samples names instead of summarized tables.

Value

list of data.tables with samples in which given genes are mutated.

Examples

# NOT RUN {
laml.maf <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
laml <- read.maf(maf = laml.maf, removeSilent = TRUE, useAll = FALSE)
genesToBarcodes(maf = laml, genes = 'DNMT3A')
# }