maigesPack (version 1.30.0)

createMaigesRaw: Function to create objects of class maigesRaw

Description

Function to create objects of class maigesRaw from objects of class maigesPreRaw.

Usage

createMaigesRaw(PreRaw, greenDataField, greenBackDataField, redDataField, redBackDataField, flagDataField, gLabelGrp, gLabelPath)

Arguments

PreRaw

object of class maigesPreRaw to be used to generate another object of class maigesRaw.

greenDataField

character string specifying the name of the Data slot from PreRaw that will be used to read the spot intensity values for green channel.

greenBackDataField

character string specifying the name of the Data slot from PreRaw that will be used to read the background intensity values for green channel.

redDataField

character string specifying the name of the Data slot from PreRaw that will be used to read the spot intensity values for red channel.

redBackDataField

character string specifying the name of the Data slot from PreRaw that will be used to read the background intensity values for red channel.

flagDataField

character string specifying the name of the Data slot from PreRaw that will be used to read the flag values.

gLabelGrp

character string with the gene label to match gene groups.

gLabelPath

character string with the gene label to match gene networks.

Value

The result of this function is an object of class maigesRaw.

See Also

loadData, maigesPreRaw,

Examples

## Load a little dataset
data(gastro)

## See the object
gastro

## Transform gastro into a maigesRaw object
gastro.raw = createMaigesRaw(gastro, greenDataField="Ch1.Mean",
  greenBackDataField="Ch1.B.Mean", redDataField="Ch2.Mean",
  redBackDataField="Ch2.B.Mean", flagDataField="Flags",
  gLabelGrp="GeneName", gLabelPath="GeneName")