maigesPack (version 1.36.0)

activeNetScoreHTML: Save HTML file with scores and p-values from functional gene networks classification

Description

This function takes an object of class maigesActNet, that is generated using the function activeNet to do functional classification of gene groups, and save an HTML file with global score for genes separated by gene groups (modules).

Usage

activeNetScoreHTML(mod=NULL, dir="./", fileSave="scores")

Arguments

mod

object of class maigesActNet, resulted from functional classification of gene networks.

dir

character string giving the folder to save the file.

fileSave

string giving the file name. You don't need to put the extension 'html', it will be put automatically.

Value

This function generates an HTML file and don't return any R value or object.

See Also

plot.maigesActNet, activeNet

Examples

## Loading the dataset
data(gastro)

## Doing functional classification of gene networks for sample Label
## given by 'Tissue'
gastro.net = activeNet(gastro.summ, sLabelID="Tissue")

activeNetScoreHTML(gastro.net)