build_haplotype_hashmap

Makes it possible to find all individuals' pid with a certain haplotype.
Must be used with e.g. <code>get_matching_pids_from_hashmap()</code>.

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

build_haplotype_hashmap function

<dl><dt>individuals</dt>
<dd>List of individuals to build hashmap of</dd>
<dt>progress</dt>
<dd>Show progress?</dd></dl>

Arguments

Build hashmap of haplotype to individuals — build_haplotype_hashmap

<dl>

<dt>individuals</dt>
<dd>List of individuals to build hashmap of</dd>


<dt>progress</dt>
<dd>Show progress?</dd>

</dl>

build_haplotype_hashmap: Build hashmap of haplotype to individuals

Description

Usage

Value

Arguments

See Also