build_pedigrees

In a newly simulated population, each individual only knows its father and children.
Using this information, this function builds pedigrees.
This makes it easier to e.g. population haplotypes, find path between two individuals
(if they are not in the same pedigree, they are not connected).

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

build_pedigrees function

<dl><dt>population</dt>
<dd>Population generated by <code>sample_geneology()</code> or <code>sample_geneology_varying_size()</code>.</dd>
<dt>progress</dt>
<dd>Show progress.</dd></dl>

Arguments

Build pedigrees from (individuals in) a population. — build_pedigrees

<dl>

<dt>population</dt>
<dd>Population generated by <code>sample_geneology()</code> or <code>sample_geneology_varying_size()</code>.</dd>


<dt>progress</dt>
<dd>Show progress.</dd>

</dl>

build_pedigrees: Build pedigrees from (individuals in) a population.

Description

Usage

Value

Arguments

See Also

Examples