construct_M

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

construct_M function

<dl><dt>meioses</dt>
<dd>number of meioses separating the two individuals</dd>
<dt>mu_dw</dt>
<dd>mutation rate for 1-step down-mutation</dd>
<dt>mu_up</dt>
<dd>mutation rate for 1-step up-mutation</dd></dl>

Arguments

Construct M matrix — construct_M

<dl>

<dt>meioses</dt>
<dd>number of meioses separating the two individuals</dd>


<dt>mu_dw</dt>
<dd>mutation rate for 1-step down-mutation</dd>


<dt>mu_up</dt>
<dd>mutation rate for 1-step up-mutation</dd>

</dl>

construct_M: Construct M matrix

Description

Usage

Arguments