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malan (version 1.0.3)

estimate_autotheta_1subpop_individuals: Estimate autosomal theta from individuals

Description

Estimate autosomal theta for one subpopulation given a list of individuals.

Usage

estimate_autotheta_1subpop_individuals(
  individuals,
  return_estimation_info = FALSE
)

Value

List:

  • theta

    • estimate: Vector of length 1 containing estimate of theta or NA if it could not be estimated

    • error: true if an error happened, false otherwise

    • details: contains description if an error happened

    • estimation_info: If return_estimation_info = true: a list with information used to estimate theta. Else NULL.

Arguments

individuals

Individuals to get haplotypes for.

return_estimation_info

Whether to return the quantities used to estimate theta

Details

Assumes that pedigrees_all_populate_autosomal() was used first to populate autosomal genotypes.