estimate_autotheta_subpops_pids

Estimates autosomal F, theta, and f for a number of subpopulations given a list of pids (individual ids).

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

estimate_autotheta_subpops_pids function

<dl><dt>population</dt>
<dd>Population obtain from simulation</dd>
<dt>subpops</dt>
<dd>List of individual pids</dd>
<dt>subpops_sizes</dt>
<dd>Size of each subpopulation</dd></dl>

Arguments

Estimate autosomal F, theta, and f from subpopulations of individual ids — estimate_autotheta_subpops_pids

<dl>

<dt>population</dt>
<dd>Population obtain from simulation</dd>


<dt>subpops</dt>
<dd>List of individual pids</dd>


<dt>subpops_sizes</dt>
<dd>Size of each subpopulation</dd>

</dl>

estimate_autotheta_subpops_pids: Estimate autosomal F, theta, and f from subpopulations of individual ids

Description

Usage

Value

Arguments

Details