get_allele_counts_pids

Assumes that <code>pedigrees_all_populate_autosomal()</code> was used first to populate autosomal genotypes.

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

get_allele_counts_pids function

<dl><dt>population</dt>
<dd>Population obtain from simulation</dd>
<dt>subpops</dt>
<dd>List of individual pids</dd></dl>

Arguments

Get autosomal allele counts from subpopulations given by pids — get_allele_counts_pids

<dl>

<dt>population</dt>
<dd>Population obtain from simulation</dd>


<dt>subpops</dt>
<dd>List of individual pids</dd>

</dl>

get_allele_counts_pids: Get autosomal allele counts from subpopulations given by pids

Description

Usage

Value

Arguments