haplotypes_to_hashes

Individuals with the same haplotype will have the same hash (integer)
and individuals with different haplotypes will have different hashes (integers).

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

haplotypes_to_hashes function

<dl><dt>population</dt>
<dd>Population obtained from simulation</dd>
<dt>pids</dt>
<dd>Vector of individual pids</dd></dl>

Arguments

Convert haplotypes to hashes (integers) — haplotypes_to_hashes

<dl>

<dt>population</dt>
<dd>Population obtained from simulation</dd>


<dt>pids</dt>
<dd>Vector of individual pids</dd>

</dl>

haplotypes_to_hashes: Convert haplotypes to hashes (integers)

Description

Usage

Value

Arguments

Details