load_haplotypes

Note that individuals loaded this way does not have information about generation.

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

load_haplotypes function

<dl><dt>population</dt>
<dd>of individuals</dd>
<dt>pid</dt>
<dd>ID of male</dd>
<dt>haplotypes</dt>
<dd><ul>
<li>row <code>i</code> has <code>pid[i]</code> ID</li>
</ul></dd>
<dt>progress</dt>
<dd>Show progress.</dd></dl>

Arguments

Load haplotypes to individuals — load_haplotypes

<dl>

<dt>population</dt>
<dd>of individuals</dd>


<dt>pid</dt>
<dd>ID of male</dd>


<dt>haplotypes</dt>
<dd><ul>
<li>row <code>i</code> has <code>pid[i]</code> ID</li>
</ul></dd>


<dt>progress</dt>
<dd>Show progress.</dd>

</dl>

load_haplotypes: Load haplotypes to individuals

Description

Usage

Arguments