sample_autosomal_genotype

MAle Lineage ANalysis by simulating
genealogies backwards and imposing short tandem repeats (STR) mutations forwards.
Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses.
Numerous analyses are possible, e.g. number of matches and meiotic distance to matches.
Refer to papers mentioned in citation("malan") (DOI's:
<doi:10.1371/journal.pgen.1007028>,
<doi:10.21105/joss.00684> and
<doi:10.1016/j.fsigen.2018.10.004>).

Mikkel Andersen

malan

MAle Lineage ANalysis

Mikkel Meyer Andersen

sample_autosomal_genotype function

<dl><dt>allele_dist</dt>
<dd>Allele distribution (probabilities) -- gets normalised</dd>
<dt>theta</dt>
<dd>Theta correction between 0 and 1 (both included)</dd></dl>

Arguments

Sample genotype with theta — sample_autosomal_genotype

<dl>

<dt>allele_dist</dt>
<dd>Allele distribution (probabilities) -- gets normalised</dd>


<dt>theta</dt>
<dd>Theta correction between 0 and 1 (both included)</dd>

</dl>

sample_autosomal_genotype: Sample genotype with theta

Description

Usage

Arguments