maldipickr

maldipickr-package

Convenient wrapper functions for the analysis of matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) spectra data in order to select only representative spectra (also called cherry-pick). The package covers the preprocessing and dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik (2018) tools:::Rd_expr_doi("10.3389/fmicb.2018.01294")) needed to cluster MALDI-TOF spectra before the final cherry-picking step. It enables the easy exclusion of spectra and/or clusters to accommodate complex cherry-picking strategies. Alternatively, cherry-picking using taxonomic identification MALDI-TOF data is made easy with functions to import inconsistently formatted reports.

internal

Convenient wrapper functions for the analysis of
matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)
spectra data in order to select only representative spectra (also
called cherry-pick). The package covers the preprocessing and
dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik
(2018) <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF
spectra before the final cherry-picking step. It enables the easy
exclusion of spectra and/or clusters to accommodate complex
cherry-picking strategies. Alternatively, cherry-picking using
taxonomic identification MALDI-TOF data is made easy with functions to
import inconsistently formatted reports.

Charlie Pauvert

Dereplicate and Cherry-Pick Mass Spectrometry Spectra

David Wylensek

Selina Nüchtern

Thomas Clavel

maldipickr-package function

Maintainer: Charlie Pauvert <a href="/link/cpauvert%40ukaachen.de?package=maldipickr&version=1.3.1" data-mini-rdoc="maldipickr::cpauvert@ukaachen.de">cpauvert@ukaachen.de</a> (<a href="https://orcid.org/0000-0001-9832-2507">ORCID</a>) [copyright holder]
Other contributors:<ul>
<li>David Wylensek (<a href="https://orcid.org/0000-0002-8424-5712">ORCID</a>) [contributor]</li>
<li>Selina Nüchtern [contributor]</li>
<li>Thomas Clavel (<a href="https://orcid.org/0000-0002-7229-5595">ORCID</a>) [contributor, funder, copyright holder]</li>
</ul>

Author

maldipickr: Dereplicate and Cherry-Pick Mass Spectrometry Spectra — maldipickr-package

Maintainer: Charlie Pauvert <a href='mailto:cpauvert@ukaachen.de'>cpauvert@ukaachen.de</a> (<a href='https://orcid.org/0000-0001-9832-2507'>ORCID</a>) [copyright holder]
Other contributors:<ul>
<li>David Wylensek (<a href='https://orcid.org/0000-0002-8424-5712'>ORCID</a>) [contributor]</li>
<li>Selina Nüchtern [contributor]</li>
<li>Thomas Clavel (<a href='https://orcid.org/0000-0002-7229-5595'>ORCID</a>) [contributor, funder, copyright holder]</li>
</ul>

maldipickr-package: maldipickr: Dereplicate and Cherry-Pick Mass Spectrometry Spectra

Description

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Author

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