coat: Coat Function

Description

This is a function for plotting an image. The analysis result can be overcoated on the template.

Usage

coat(
  x,
  y = NULL,
  pseq = NULL,
  xyz = NULL,
  col.x = gray(0:64/64),
  col.y = NULL,
  breaks.y = NULL,
  zlim.x = NULL,
  zlim.y = NULL,
  rownum = 5,
  colnum = NULL,
  plane = c("axial", "coronal", "sagittal", "all")[1],
  xlab = "",
  ylab = "",
  axes = FALSE,
  oma = rep(0, 4),
  mar = rep(0, 4),
  bg = "black",
  paron = TRUE,
  cross.hair = FALSE,
  chxy = NULL,
  color.bar = TRUE,
  regionplot = FALSE,
  atlasdataset = NULL,
  regionname = c("atlas", "stat")[1],
  regionlegend = FALSE,
  atlasname = "",
  ROIids = 1:9,
  ...
)

Arguments

x: image1. Base image.
y: image2 to be overcoated.
pseq: a vector plot sequence.
xyz: a vector position to be plotted.
col.x: a color vector for image1.
col.y: a color vector for image2.
breaks.y: a vector breaks value for y.
zlim.x: a vector plot limitation values for z of x.
zlim.y: a vector plot limitation values for z of y.
rownum: a numeric, the number of row for the plot.
colnum: a numeric, the number of colnum for the plot.
plane: a vector plot sequence.
xlab: a character for a label in the x axis.
ylab: a character for a label in the y axis.
axes: a logical. TRUE presents the axes.
oma: a vector for outer margin area.
mar: a vector for margin.
bg: a character for color of background.
paron: a logical. TRUE means par is used.
cross.hair: a logical.
chxy: a vector cross hair position to be plotted.
color.bar: a logical.
regionplot: a logical.
atlasdataset: a matrix or data.frame. colnames shold include "ROIid" and "ROIname".
regionname: a character.
regionlegend: a logical.
atlasname: a character.
ROIids: a vector
...: further arguments passed to or from other methods.

Details

coat requires a image array.

Examples

Run this code


data(exbrain)
coat(exbrain)

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