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manhattanly

The goal of manhattanly is to create interactive manhattan, Q-Q and volcano plots

Installation

You can install manhattanly from CRAN:

install.packages("manhattanly")

Alternatively, you can install the development version of manhattanly from GitHub with:

install.packages("devtools")
devtools::install_github("sahirbhatnagar/manhattanly", build_vignettes = TRUE)

Vignette

See the online vignette for example usage of the functions.

Credit

This package is inspired by the qqman package by Stephen Turner. The pre-processing of the data in the manhattanly package is based on the qqman::manhattan and qqman::qq functions.

The splitting of the tasks into data pre-processing and plot rendering is inspired by the heatmaply package by Tal Galili

Related Work

Contact

Latest news

You can see the most recent changes to the package in the NEWS.md file

Code of Conduct

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

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Version

Install

install.packages('manhattanly')

Monthly Downloads

462

Version

0.2.0

License

MIT + file LICENSE

Issues

Pull Requests

Stars

Forks

Maintainer

Sahir Bhatnagar

Last Published

November 16th, 2016

Functions in manhattanly (0.2.0)

volcanoly

Creates a plotly volcano plot
HapMap

Subset of HapMap data with simulated GWAS results
manhattanly

Creates a plotly manhattan plot
qqly

Creates a plotly Q-Q plot
significantSNP

Character vector of SNPs to highlight
qqr

Creates a qq object
manhattanr

Creates a manhattanr object
volcanor

Creates a volcano object