manta-class


A simple list-based class for storing read counts from digital gene expression technologies and other important information for the analysis of (meta)transcriptomic data.


classes

Tools for robust comparative metatranscriptomics.

Chris Berthiaume

manta

Microbial Assemblage Normalized Transcript Analysis

manta-class function

Objects of this class contain (at least) the following list components: <code>counts</code>: numeric matrix containing the read counts. <code>samples</code>: data.frame containing the library size and group labels. Additionally the class should contain the following meta/taxinomic information list components: <code>meta</code>: numeric matrix containing the read counts. <code>meta.sum</code>: data.frame containing the library size and group labels. Also, the list could also contain further optional information: <code>genes</code>: data.frame containing further gene annotation information for each row in counts. 

Slots/List Components

This class inherits directly from class <code>list</code> so any operation appropriate for lists will work on objects of this class.
<code>manta</code> objects also have a <code>show</code> method.

Methods

A simple list-based class for storing read counts from digital gene expression technologies and other important information for the analysis of (meta)transcriptomic data.

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manta-class: Microbial Assemblage Normalized Transcript Analysis - class

Description

Arguments

Slots/List Components

Methods

See Also