available_models

Table containing the available models to be fit using <code>fit_devmodels()</code>.
These models come from two other packages:
<a href="https://cran.r-project.org/package=devRate"><code>devRate</code> </a> and
<a href="https://padpadpadpad.github.io/rTPC/"><code>rTPC</code> </a>.

datasets

There are three different modules: (1) model fitting and selection
using a set of the most commonly used equations describing developmental
responses to temperature helped by already existing R packages ('rTPC')
and nonlinear regression model functions from 'nls.multstart'
(Padfield et al. 2021, <doi:10.1111/2041-210X.13585>), with visualization
of model predictions to guide ecological criteria for model selection;
(2) calculation of suitability thermal limits, which consist on a
temperature interval delimiting the optimal performance zone or suitability;
and (3) climatic data extraction and visualization inspired on previous
research (Taylor et al. 2019, <doi:10.1111/1365-2664.13455>), with either
exportable rasters, static map images or html, interactive maps.

Darío San-Segundo Molina

mappestRisk

Create Maps Forecasting Risk of Pest Occurrence

A. Márcia Barbosa

Antonio Jesús Pérez-Luque

Francisco Rodríguez-Sánchez

available_models function

<div class="section" id="available-models">
<h3><code>available_models</code></h3>
A data.frame/tibble with 13 rows and 6 columns:
<dl><dt>model_name</dt>
<dd>Model name to be used within <code>fit_devmodels()</code>.</dd>
<dt>package</dt>
<dd>names of the packages used by <code>fit_devmodels()</code> to obtain
appropriate start values for the user-provided data.
When the package is <a href="https://padpadpadpad.github.io/rTPC/">rTPC package</a>,
start values are automatically computed with <code>rTPC::get_start_vals()</code>,
which in turn relies on <code>nls.multstart::nls_multstart()</code>.
When the package is <a href="https://github.com/frareb/devRate">devRate package</a>,
iterative starting values are computed using <code>nls.multstart::nls_multstart()</code>,
using the parameters published in <code>devRate::devRateEqStartVal()</code>
as first attempts to iterate.
As an exception, if <code>model_name == "briere1"</code>, generic starting values are provided
and advised to the user due to the unrealistic value of some parameters in the
<code>devRate</code> data set.</dd>
<dt>source_model_name</dt>
<dd>name of the function in the source packages <code>rTPC</code> and <code>devRate</code>.</dd>
<dt>formula, working_formula, n_params</dt>
<dd>formulas used for model fitting.</dd>
</dl></div>

Format

Available Models Table — available_models

<div class='section' id='available-models'>
<h3><code>available_models</code></h3>


A data.frame/tibble with 13 rows and 6 columns:
<dl>

<dt>model_name</dt>
<dd>Model name to be used within <code>fit_devmodels()</code>.</dd>


<dt>package</dt>
<dd>names of the packages used by <code>fit_devmodels()</code> to obtain
appropriate start values for the user-provided data.
When the package is <a href="https://padpadpadpad.github.io/rTPC/">rTPC package</a>,
start values are automatically computed with <code>rTPC::get_start_vals()</code>,
which in turn relies on <code>nls.multstart::nls_multstart()</code>.
When the package is <a href="https://github.com/frareb/devRate">devRate package</a>,
iterative starting values are computed using <code>nls.multstart::nls_multstart()</code>,
using the parameters published in <code>devRate::devRateEqStartVal()</code>
as first attempts to iterate.
As an exception, if <code>model_name == "briere1"</code>, generic starting values are provided
and advised to the user due to the unrealistic value of some parameters in the
<code>devRate</code> data set.</dd>


<dt>source_model_name</dt>
<dd>name of the function in the source packages <code>rTPC</code> and <code>devRate</code>.</dd>


<dt>formula, working_formula, n_params</dt>
<dd>formulas used for model fitting.</dd>


</dl>

</div>

available_models: Available Models Table

Description

Usage

Arguments

Format

`available_models`