check_pairwise

An object of class <code>mappoly.sequence</code>

input.seq

An object of class <code>poly.est.two.pts.pairwise</code>

twopt

Check if all pairwise combinations of elements of <code>input.seq</code>
are contained in <code>twopt</code>

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologues. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

check_pairwise function

Check if all pairwise combinations of elements of <code>input.seq</code>
are contained in <code>twopt</code> — check_pairwise

Check if all pairwise combinations of elements of <code>input.seq</code>
are contained in <code>twopt</code>

check_pairwise: Check if all pairwise combinations of elements of `input.seq` are contained in `twopt`

Description

Usage

Arguments

Value