elim_conf_using_two_pts

an object of class <code>mappoly.sequence</code>.

input.seq

an object of class <code>poly.est.two.pts.pairwise</code>

twopt

threshold from which the linkage phases can be
discarded (if abs(ph_LOD) &gt; thres)

thres

Drops unlikely configuration phases given the two-point information
and a LOD threshold

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologues. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

elim_conf_using_two_pts function

Eliminate configurations using two-point information — elim_conf_using_two_pts

Eliminate configurations using two-point information

elim_conf_using_two_pts: Eliminate configurations using two-point information

Description

Usage

Arguments

Value