elim_equiv

<p>a list of matrices whose columns represent homologous
chromosomes and the rows represent markers</p>

<p>Drop equivalent linkage phase configurations, i.e. the ones which
have permuted homologous chromosomes</p>

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologues. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see  Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

elim_equiv function

Eliminates equivalent linkage phase configurations — elim_equiv

Eliminates equivalent linkage phase configurations

elim_equiv: Eliminates equivalent linkage phase configurations

Description

Usage

Arguments

Value