filter_missing_ind

an object of class <code>"mappoly.data"</code>

input.data

maximum percentage of missing data

filter.thres

if <code>TRUE</code>, plots markers vs. frequency of genotyped individuals

inter

Filter individuals based on missing genotypes

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologues. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

filter_missing_ind function

Filter individuals based on missing genotypes — filter_missing_ind

Filter individuals based on missing genotypes

filter_missing_ind: Filter individuals based on missing genotypes

Description

Usage

Arguments