get_ph_conf_ret_sh

<p>matrix whose columns represent homologous chromosomes and
the rows represent markers</p>

<p>Given a homology group in matrix form, it returns the number shared
homologous for all pairs of markers in this group</p>

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologues. For situations where pairwise analysis has
limited power, the algorithm relies on the multilocus likelihood
obtained through a hidden Markov model (HMM). For more detail,
please see  Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378>
and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

get_ph_conf_ret_sh function

Given a homology group in matrix form, it returns the number shared
homologous for all pairs of markers in this group — get_ph_conf_ret_sh

Given a homology group in matrix form, it returns the number shared
homologous for all pairs of markers in this group

get_ph_conf_ret_sh: Given a homology group in matrix form, it returns the number shared homologous for all pairs of markers in this group

Description

Usage

Arguments

Value