calc_genoprob_haplo

<p>Compute conditional probabilities of the genotypes given a sequence 
of block markers</p>

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologous chromosomes. For situations where pairwise
analysis has limited power, the algorithm relies on the multilocus
likelihood obtained through a hidden Markov model (HMM).
For more detail, please see  Mollinari and Garcia (2019)
<doi:10.1534/g3.119.400378> and Mollinari et al. (2020)
<doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Cristiane Taniguti

Jeekin Lau

Oscar Riera-Lizarazu

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

calc_genoprob_haplo function

Compute conditional probabilities of the genotypes given a sequence 
of block markers — calc_genoprob_haplo

Compute conditional probabilities of the genotypes given a sequence 
of block markers

calc_genoprob_haplo: Compute conditional probabilities of the genotypes given a sequence of block markers

Description

Usage

Arguments