check_pairwise

Check if all pairwise combinations of elements of <code>input.seq</code>
are contained in <code>twopt</code>

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologous chromosomes. For situations where pairwise
analysis has limited power, the algorithm relies on the multilocus
likelihood obtained through a hidden Markov model (HMM).
For more detail, please see Mollinari and Garcia (2019)
<doi:10.1534/g3.119.400378> and Mollinari et al. (2020)
<doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Cristiane Taniguti

Jeekin Lau

Oscar Riera-Lizarazu

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

check_pairwise function

<dl><dt>input.seq</dt>
<dd>An object of class <code>mappoly.sequence</code></dd>
<dt>twopt</dt>
<dd>An object of class <code>mappoly.twopt</code></dd></dl>

Arguments

Check if all pairwise combinations of elements of input.seq
are contained in twopt — check_pairwise

<dl>

<dt>input.seq</dt>
<dd>An object of class <code>mappoly.sequence</code></dd>


<dt>twopt</dt>
<dd>An object of class <code>mappoly.twopt</code></dd>

</dl>

Check if all pairwise combinations of elements of <code>input.seq</code>
are contained in <code>twopt</code>

check_pairwise: Check if all pairwise combinations of elements of `input.seq` are contained in `twopt`

Description

Usage

Value

Arguments