elim_equiv

Drop equivalent linkage phase configurations, i.e. the ones which
have permuted homologous chromosomes

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologous chromosomes. For situations where pairwise
analysis has limited power, the algorithm relies on the multilocus
likelihood obtained through a hidden Markov model (HMM).
For more detail, please see Mollinari and Garcia (2019)
<doi:10.1534/g3.119.400378> and Mollinari et al. (2020)
<doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Cristiane Taniguti

Jeekin Lau

Oscar Riera-Lizarazu

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

elim_equiv function

<dl><dt>Z</dt>
<dd>a list of matrices whose columns represent homologous
chromosomes and the rows represent markers</dd></dl>

Arguments

Marcelo Mollinari, <a href="/link/mmollin%40ncsu.edu?package=mappoly&version=0.4.1" data-mini-rdoc="mappoly::mmollin@ncsu.edu">mmollin@ncsu.edu</a>

Author

Eliminates equivalent linkage phase configurations — elim_equiv

<dl>

<dt>Z</dt>
<dd>a list of matrices whose columns represent homologous
chromosomes and the rows represent markers</dd>

</dl>

Marcelo Mollinari, <a href='mailto:mmollin@ncsu.edu'>mmollin@ncsu.edu</a>

elim_equiv: Eliminates equivalent linkage phase configurations

Description

Usage

Value

Arguments

Author