filter_missing_mrk

Filter markers based on missing genotypes

internal

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologous chromosomes. For situations where pairwise
analysis has limited power, the algorithm relies on the multilocus
likelihood obtained through a hidden Markov model (HMM).
For more detail, please see Mollinari and Garcia (2019)
<doi:10.1534/g3.119.400378> and Mollinari et al. (2020)
<doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Cristiane Taniguti

Jeekin Lau

Oscar Riera-Lizarazu

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

filter_missing_mrk function

<dl><dt>input.data</dt>
<dd>an object of class <code>"mappoly.data"</code></dd>
<dt>filter.thres</dt>
<dd>maximum percentage of missing data</dd>
<dt>inter</dt>
<dd>if <code>TRUE</code>, expects user-input to proceed with filtering</dd></dl>

Arguments

Filter markers based on missing genotypes — filter_missing_mrk

<dl>

<dt>input.data</dt>
<dd>an object of class <code>"mappoly.data"</code></dd>


<dt>filter.thres</dt>
<dd>maximum percentage of missing data</dd>


<dt>inter</dt>
<dd>if <code>TRUE</code>, expects user-input to proceed with filtering</dd>

</dl>

Filter markers based on missing genotypes

filter_missing_mrk: Filter markers based on missing genotypes

Description

Usage

Arguments