mappoly (version 0.4.1)

get_genomic_order: Get the genomic position of markers in a sequence

Description

This functions gets the genomic position of markers in a sequence and return an ordered data frame with the name and position of each marker

Usage

get_genomic_order(input.seq, verbose = TRUE)
# S3 method for mappoly.geno.ord
print(x, ...)
# S3 method for mappoly.geno.ord
plot(x, ...)

Arguments

input.seq

a sequence object of class mappoly.sequence

verbose

if TRUE (default), the current progress is shown; if FALSE, no output is produced

x

an object of the class mappoly.geno.ord

...

currently ignored

Author

Marcelo Mollinari,

Examples

s1 <- make_seq_mappoly(tetra.solcap, "all")
o1 <- get_genomic_order(s1)
plot(o1)
s.geno.ord <- make_seq_mappoly(o1)