import_phased_maplist_from_polymapR

Function to import phased map lists from polymapR

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologous chromosomes. For situations where pairwise
analysis has limited power, the algorithm relies on the multilocus
likelihood obtained through a hidden Markov model (HMM).
For more detail, please see Mollinari and Garcia (2019)
<doi:10.1534/g3.119.400378> and Mollinari et al. (2020)
<doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Cristiane Taniguti

Jeekin Lau

Oscar Riera-Lizarazu

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

import_phased_maplist_from_polymapR function

<dl><dt>maplist</dt>
<dd>a list of phased maps obtained using function 
<code>create_phased_maplist</code> from package <code>polymapR</code></dd>
<dt>mappoly.data</dt>
<dd>a dataset used to obtain <code>maplist</code>, 
converted into class <code>mappoly.data</code></dd>
<dt>ploidy</dt>
<dd>the ploidy level</dd></dl>

Arguments

Marcelo Mollinari <a href="/link/mmollin%40ncsu.edu?package=mappoly&version=0.4.1" data-mini-rdoc="mappoly::mmollin@ncsu.edu">mmollin@ncsu.edu</a>

Author

Import phased map list from polymapR — import_phased_maplist_from_polymapR

<dl>

<dt>maplist</dt>
<dd>a list of phased maps obtained using function 
<code>create_phased_maplist</code> from package <code>polymapR</code></dd>


<dt>mappoly.data</dt>
<dd>a dataset used to obtain <code>maplist</code>, 
converted into class <code>mappoly.data</code></dd>


<dt>ploidy</dt>
<dd>the ploidy level</dd>

</dl>

Marcelo Mollinari <a href='mailto:mmollin@ncsu.edu'>mmollin@ncsu.edu</a>

import_phased_maplist_from_polymapR: Import phased map list from polymapR

Description

Usage

Arguments

Author

Details

References