mappoly (version 0.4.1)

merge_parental_maps: Build merged parental maps

Description

Build merged parental maps

Usage

merge_parental_maps(
  map.p1,
  map.p2,
  full.seq,
  full.mat,
  method = c("ols", "hmm"),
  verbose = TRUE
)

Value

object of class mappoly.map with both parents information

Arguments

map.p1

object of class mappoly.map with parent 1 phased

map.p2

object of class mappoly.map with parent 2 phased

full.seq

object of class mappoly.sequence containing parent 1 and parent 2 markers

full.mat

object of class mappoly.rf.matrix containing two-points recombination fraction estimations for parent 1 and parent 2 markers

method

indicates whether to use 'hmm' (Hidden Markov Models), 'ols' (Ordinary Least Squares) to re-estimate the recombination fractions

Author

Marcelo Mollinari, with documentation and minor modifications by Cristiane Taniguti