segreg_poly

Computes the polysomic segregation frequency given a ploidy level
and the dosage of the locus in both parents. It does not consider
double reduction.

Construction of genetic maps in autopolyploid full-sib populations.
Uses pairwise recombination fraction estimation as the first
source of information to sequentially position allelic variants
in specific homologous chromosomes. For situations where pairwise
analysis has limited power, the algorithm relies on the multilocus
likelihood obtained through a hidden Markov model (HMM).
For more detail, please see Mollinari and Garcia (2019)
<doi:10.1534/g3.119.400378> and Mollinari et al. (2020)
<doi:10.1534/g3.119.400620>.

Marcelo Mollinari

mappoly

Genetic Linkage Maps in Autopolyploids

Gabriel Gesteira

Cristiane Taniguti

Jeekin Lau

Oscar Riera-Lizarazu

Guilhereme Pereira

Augusto Garcia

Zhao-Bang Zeng

Katharine Preedy

Robert Gentleman

Ross Ihaka

R Foundation 

R-core 

segreg_poly function

<dl><dt>ploidy</dt>
<dd>the ploidy level</dd>
<dt>dP</dt>
<dd>the dosage in parent P</dd>
<dt>dQ</dt>
<dd>the dosage in parent Q</dd></dl>

Arguments

Marcelo Mollinari, <a href="/link/mmollin%40ncsu.edu?package=mappoly&version=0.4.1" data-mini-rdoc="mappoly::mmollin@ncsu.edu">mmollin@ncsu.edu</a>

Author

Polysomic segregation frequency — segreg_poly

<dl>

<dt>ploidy</dt>
<dd>the ploidy level</dd>


<dt>dP</dt>
<dd>the dosage in parent P</dd>


<dt>dQ</dt>
<dd>the dosage in parent Q</dd>

</dl>

Marcelo Mollinari, <a href='mailto:mmollin@ncsu.edu'>mmollin@ncsu.edu</a>

segreg_poly: Polysomic segregation frequency

Description

Usage

Value

Arguments

Author

References

Examples