gene_mapping

A data set showing the mapping between gene names and Ensembl gene IDs,
derived from the EnsDb.Hsapiens.v79 Bioconductor package.

datasets

Implementation of the 'MarkerPen' algorithm, short for marker gene detection
via penalized principal component analysis, described in the paper by Qiu, Wang, Lei,
and Roeder (2021, <doi:10.1093/bioinformatics/btab257>). 'MarkerPen' is a semi-supervised
algorithm for detecting marker genes by combining prior marker information with bulk
transcriptome data.

Yixuan Qiu

markerpen

Marker Gene Detection via Penalized Principal Component Analysis

Jiebiao Wang

Jing Lei

Kathryn Roeder

gene_mapping function

A data frame with 59074 rows and 2 variables:<dl>
 <dt>ensembl</dt>
<dd>Ensembl gene IDs</dd> <dt>name</dt>
<dd>corresponding gene names</dd>
</dl>

Format

Mapping gene names to Ensembl IDs — gene_mapping

A data frame with 59074 rows and 2 variables:<dl>
 <dt>ensembl</dt>
<dd>Ensembl gene IDs</dd>

 <dt>name</dt>
<dd>corresponding gene names</dd>


</dl>

gene_mapping: Mapping gene names to Ensembl IDs

Description

Usage

Arguments

Format