htmlPage: Display gene list as a HTML page

Description

Given a set of index to a data.frame containing gene names information. We create a web page with one element per genes that contains URLs links to various external database links. E.g Operon oligodatabase , Riken, GenBank and PubMed web sites.

Usage

htmlPage(genelist, filename = "GeneList.html", geneNames = Gnames, mapURL = SFGL, othernames, title, table.head, table.center = TRUE, disp = c("browser", "file")[1])
table2html(restable, filename = "GeneList.html", mapURL = SFGL, title, table.head, table.center = TRUE, disp = c("browser", "file")[1])

Arguments

restable

A data.frame that contains only the information you wish to display in the html file. The rows corresponds to a different DNA spots.

genelist

A numeric vector of index to a data.frame

filename

The name of the file to store the HTML in.

geneNames

A data.frame containing the information related the each DNA spots.

mapURL

A matrix of characters containing the URL for various external database. E.g SFGL.

othernames

A data.frame containing other information.

title

Title of the HTML page

table.head

A character vector of column labels for the table

table.center

A logical indicating whether the table should be centered

disp

Either "File" or "Browser" (default is Browser). File will save the information in html file, while Browser will create an html files and display information in the user's browser.

Value

No value is return, the function produce a html file "filename" and output the results in a browser.

Details

This function is an extension to ll.htmlpage

Examples

Run this code

##library(annotate)
data(swirl)
Gnames <- maGeneTable(swirl)
swirlmap <- mapGeneInfo(Name = "none", ID="genbank")
## htmlPage(100:110, geneNames = Gnames, mapURL = swirlmap, title="Swirl")

moreinfo <- round(maM(swirl), 2)
swirlmap <- mapGeneInfo(Name = "pubmed", ID="genbank")
##htmlPage(100:110, geneNames = Gnames, mapURL = swirlmap, othernames=moreinfo, title="Swirl", disp="file")