Usage
maTwoSamples(targetfile, normdata, Trt, Ctl, targetID = "TargetName", slidesID = "Slides", dyesID = "Dyes", RedID = 5, path = ".", output = TRUE)
Arguments
targetfile
A data.frame containing target samples information.
normdata
A R object of class 'marrayNorm'
Trt
A character string representing "treatment" sample.
Ctl
A character string representing "controls" sample.
targetID
A character string representing the column name
in 'targetfile' containing target samples information.
slidesID
A character string representing the column name
in 'targetfile' containing the slide label.
dyesID
A character string representing the column name
in 'targetfile' containing dye labeled information.
RedID
The character use to represent the Cy5 dye.
path
A character string representing the data directory. By
default this is set to the current working directory (".").
output
Save and tab delimited file