exampleMascarade

The object is a list with three elements:<ol>
<li><code>dims</code> -- matrix of UMAP coordinates of the cells,</li>
<li><code>clusters</code> -- vector of cell population annotations,</li>
<li><code>features</code> -- matrix withgene expression for several genes.</li>
</ol>

Implements a procedure to automatically generate 2D masks
for clusters on dimensional reduction plots from methods like
t-SNE (t-distributed stochastic neighbor embedding) or
UMAP (uniform manifold approximation and projection),
with a focus on single-cell RNA-sequencing data.

Alexey Sergushichev

exampleMascarade: Example data with UMAP points from PBMC3K dataset.

Description

Arguments