cov_udi_single

This is an internal (non-exported) function. This help
 page provides additional documentation mainly intended for
 developers and expert users.

internal

Implements the multivariate adaptive shrinkage (mash)
method of Urbut et al (2019) <DOI:10.1038/s41588-018-0268-8> for
estimating and testing large numbers of effects in many conditions
(or many outcomes). Mash takes an empirical Bayes approach to
testing and effect estimation; it estimates patterns of similarity
among conditions, then exploits these patterns to improve accuracy
of the effect estimates. The core linear algebra is implemented in
C++ for fast model fitting and posterior computation.

Peter Carbonetto

mashr

Multivariate Adaptive Shrinkage

Matthew Stephens

Sarah Urbut

Gao Wang

Yuxin Zou

Yunqi Yang

Sam Roweis

David Hogg

Jo Bovy

cov_udi_single function

<dl><dt>data</dt>
<dd>a mash data object</dd>
<dt>model</dt>
<dd>a vector of length R of "U","D" and "I"</dd></dl>

Arguments

Computes the covariance matrix for a single UDI model — cov_udi_single

<dl>

<dt>data</dt>
<dd>a mash data object</dd>


<dt>model</dt>
<dd>a vector of length R of "U","D" and "I"</dd>

</dl>

Computes the covariance matrix for a single UDI model

cov_udi_single: Computes the covariance matrix for a single UDI model

Description

Usage

Value

Arguments