mash_set_data_contrast

This is an internal (non-exported) function. This help
 page provides additional documentation mainly intended for
 developers and expert users.

internal

Implements the multivariate adaptive shrinkage (mash)
method of Urbut et al (2019) <DOI:10.1038/s41588-018-0268-8> for
estimating and testing large numbers of effects in many conditions
(or many outcomes). Mash takes an empirical Bayes approach to
testing and effect estimation; it estimates patterns of similarity
among conditions, then exploits these patterns to improve accuracy
of the effect estimates. The core linear algebra is implemented in
C++ for fast model fitting and posterior computation.

Peter Carbonetto

mashr

Multivariate Adaptive Shrinkage

Matthew Stephens

Sarah Urbut

Gao Wang

Yuxin Zou

Yunqi Yang

Sam Roweis

David Hogg

Jo Bovy

mash_set_data_contrast function

<dl><dt>mashdata</dt>
<dd>a mash data object containing the Bhat matrix,
standard errors, V; created using <code>mash_set_data</code></dd>
<dt>L</dt>
<dd>the contrast matrix</dd></dl>

Arguments

Create a data object for mash contrast analysis — mash_set_data_contrast

<dl>

<dt>mashdata</dt>
<dd>a mash data object containing the Bhat matrix,
standard errors, V; created using <code>mash_set_data</code></dd>


<dt>L</dt>
<dd>the contrast matrix</dd>

</dl>

Create a data object for mash contrast analysis

mash_set_data_contrast: Create a data object for mash contrast analysis

Description

Usage

Value

Arguments