matR (version 0.9.1)

search.MGRAST: Find metagenomes matching specified criteria

Description

Find metagenomes matching search terms specified for metadata, annotations, and/or md5s, giving minimal or detailed metadata per metagenome.

Usage

search.MGRAST(public=NULL, detail=NULL, match.all=TRUE, ..., quiet=TRUE)

Arguments

public

optional restriction on sharing status (NULL or logical)

detail

level of metadata detail (NULL, TRUE, or character)

match.all

require match on all provided criteria? (logical)

…

arguments to call.MGRAST()

quiet

suppress messages and warnings? (logical)

Value

Complete technical documentation is forthcoming. For the current preliminary release, please refer to the examples provided.

Details

Complete technical documentation is forthcoming. For the current preliminary release, please refer to the examples provided.

See Also

dir.MGRAST, metadata.character, MGRASTer::call.MGRAST

Examples

# NOT RUN {
####  relevant documentation for the underlying API call
doc.MGRAST (3, head=c('metagenome','query','parameters','options'))
# }