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matchBox (version 1.14.0)

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Description

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

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Version

Version

1.14.0

License

Artistic-2.0

Maintainer

Luigi Marchionni

Last Published

February 15th, 2017

Functions in matchBox (1.14.0)

matchBoxExpression

Example data: ranking from three differential gene expression experiments
calcHypPI

Probability intervals calculation for CAT curves using the hypergeometric distribution.
computeCat

Computing overlap proportions among ordered vectors
matchBox-package

A package to produce Correspondence-At-Top plots (CAT-plots) between ranked list of genes.
filterRedundant

This functions removes redundant features from a data.frame
mergeData

Merging data.frames based on common identifiers
plotCat

Plotting correspondence at the top curves