plotScene: graphical visualization of a mating scene object

Description

Visualize a mating scene

Usage

plotScene(scene, dimension = "auto", opening = NULL, closing = NULL, dailyPoints = TRUE, drawQuartiles = TRUE, sub = NULL, N = 1, xlab.spat = NULL, ylab.spat = NULL, pch = 19, pt.cex = 0.75, text.cex = 0.6, quartile.lwd = 1, quartile.col = "gray55", peak.col = "gray27", labelID = FALSE, mt1 = "F", mt2 = "M", ...)

Arguments

scene

a matingScene object

dimension

what dimension(s) of the mating scene should be visualized. Possible dimensions are 't' for temporal, 's' for spatial, 'mt' for mating type, and 'auto' (the default). For dimension = 'auto', all dimensions represented in the mating scene object will be plotted.

opening

the number of days to adjust the start date displayed for the temporal dimension. Start date defaults to minimum day of year of start date in mating scene object.

closing

the number of days to adjust the end date displayed for the temporal dimension. End date defaults to maximum day of year end date in mating scene object.

dailyPoints

logical indicating whether daily counts of individuals should be displayed for plots of the temporal dimension

drawQuartiles

logical indicating whether vertical lines should be drawn at population peak (see details) or quartiles

sub

a vector containing the ids of individuals to be highlighted in the plots or a character string specifying how to choose individuals to highlight. Possible values are "random" or "all". If NULL, no subset will be identified in the plots.

a positive number, the number of individuals to sample if sub = 'random'

xlab.spat

character label for x-axis of spatial dimension plots. If NULL, defaults to 'easting'.

ylab.spat

character label for y-axis of spatial dimension plots. If NULL, defaults to 'northing'.

pch

specify point type to be used in plots. Defaults to pch = 19 (filled-in circle). If NULL, points will be labeled with their id.

pt.cex

specify point expansion factor (point size relative to device default)

text.cex

specify text expansion factor (text size relative to device default)

quartile.lwd

if drawQuartiles = TRUE, specifies weight of quartile and peak lines relative to device default.

quartile.col

if drawQuartiles = TRUE, specifies color of quartile lines, defaults to 'gray81'.

peak.col

if drawQuartiles = TRUE, specify color of peak lines, defaults to 'gray27'.

labelID

if TRUE, the y-axis will be labeled with the id of the corresponding segment.

mt1

label for mating type '1', if dioecious

mt2

label for mating type '2', if dioecious

...

standard graphical parameters

Value

nothingoptional arguments for the plot function

Details

Population peak is defined by when maximum number individuals were reproductively receptive on one day. If multiple days had the same maximum number, peak is defined as the median of these dates.

Examples

Run this code

pop <- simulateScene()
plotScene(pop)
## Not run: plotMap(NULL)