summary.ccc_lmm_reml

Produces a detailed summary of a <code>"ccc_lmm_reml"</code> object, including
Lin's CCC estimates and associated variance component estimates per method pair.

Compute correlation and other association matrices from
small to high-dimensional datasets with relative simple functions and
sensible defaults. Includes options for shrinkage and robustness to improve
results in noisy or high-dimensional settings (p >= n), plus convenient
print/plot methods for inspection. Implemented with optimised C++ backends
using BLAS/OpenMP and memory-aware symmetric updates. Works with base
matrices and data frames, returning standard R objects via a consistent S3
interface. Useful across genomics, agriculture, and machine-learning
workflows. Supports Pearson, Spearman, Kendall, distance correlation,
partial correlation, and robust biweight mid-correlation; Bland–Altman
analyses and Lin's concordance correlation coefficient (including
repeated-measures extensions). Methods based on Ledoit and Wolf (2004)
<doi:10.1016/S0047-259X(03)00096-4>; Schäfer and Strimmer (2005)
<doi:10.2202/1544-6115.1175>; Lin (1989) <doi:10.2307/2532051>.

Thiago de Paula Oliveira

matrixCorr

Collection of Correlation and Association Estimators

summary.ccc_lmm_reml function

<dl><dt>object</dt>
<dd>An object of class <code>"ccc_lmm_reml"</code>, as returned by <code>ccc_lmm_reml()</code>.</dd>
<dt>digits</dt>
<dd>Integer; number of decimal places to round CCC estimates and components.</dd>
<dt>ci_digits</dt>
<dd>Integer; decimal places for confidence interval bounds.</dd>
<dt>show_ci</dt>
<dd>Character string indicating whether to show confidence intervals:
<code>"auto"</code> (default) shows only if non-NA CIs exist, <code>"yes"</code> always shows CIs,
<code>"no"</code> never shows them.</dd>
<dt>...</dt>
<dd>Additional arguments (ignored).</dd></dl>

Arguments

Summary Method for ccc_lmm_reml Objects — summary.ccc_lmm_reml

<dl>

<dt>object</dt>
<dd>An object of class <code>"ccc_lmm_reml"</code>, as returned by <code>ccc_lmm_reml()</code>.</dd>


<dt>digits</dt>
<dd>Integer; number of decimal places to round CCC estimates and components.</dd>


<dt>ci_digits</dt>
<dd>Integer; decimal places for confidence interval bounds.</dd>


<dt>show_ci</dt>
<dd>Character string indicating whether to show confidence intervals:
<code>"auto"</code> (default) shows only if non-NA CIs exist, <code>"yes"</code> always shows CIs,
<code>"no"</code> never shows them.</dd>


<dt>...</dt>
<dd>Additional arguments (ignored).</dd>

</dl>

summary.ccc_lmm_reml: Summary Method for `ccc_lmm_reml` Objects

Description

Usage

Value

Arguments