Learn R Programming

matrixcut (version 0.0.1)

Determines Clustering Threshold Based on Similarity Values

Description

The user must supply a matrix filled with similarity values. The software will search for significant differences between similarity values at different hierarchical levels. The algorithm will return a Loess-smoothed plot of the similarity values along with the inflection point, if there are any. There is the option to search for an inflection point within a specified range. The package also has a function that will return the matrix components at a specified cutoff. References: Mullner. ; Cserhati, Carter. (2020, Journal of Creation 34(3):41-50), .

Copy Link

Version

Install

install.packages('matrixcut')

Monthly Downloads

165

Version

0.0.1

License

GPL (>= 3)

Maintainer

Matthew Cserhati

Last Published

March 24th, 2023

Functions in matrixcut (0.0.1)

liliales

Chloroplast genome sequence similarity matrix for 163 Liliales species
cutoffplot

Draws a Plot Showing the Number of Similarity Values as a Function of the Cutoff Value.
matrixcut

Calculates The Component Membership in a Sequence Similarity Matrix at a given Cutoff Value
componentplot

Draws a Plot Showing the Number of Components as a Function of the Cutoff Value.
primates

Mitochondrial genome sequence similarity matrix for 31 primate species
xenarthra

Mitochondrial genome sequence similarity matrix for 37 Xenarthra species